PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g02090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 429aa    MW: 48382.6 Da    PI: 9.6152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g02090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.4e-1350138296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     fk+ +   +l++g +++pk+f++++gg       l l+ ++g +We+    +k + + ++l+kGWkeF+    L  g  v+Fk++++ +    v+
  Vang06g02090.1  50 FKIIVD-TTLQKGKFMIPKEFTRKYGGRL--LNPLFLKVPDGIEWELCW--TKDGTGnVWLEKGWKEFATYYSLGYGHLVTFKYQQTCTL--EVH 137
                     555533.4556677***********9884..456************999..55555559************************9885555..665 PP

                     E CS
              B3  96 v 96 
                     +
  Vang06g02090.1 138 I 138
                     5 PP

2B352.21.1e-162222981095
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + +  +lv+p  f++++ +k+++++++ l+ ++gr+W v+l  ++++    + kGW+ Fv+ n L++gD+++F+l+++  + +++k
  Vang06g02090.1 222 NVNGYILVIPSIFTKKY-LKETGKQDILLQVLDGRTWHVTL--KNGK----FFKGWRAFVSHNYLNVGDVCIFELTES--QAPCFK 298
                     4445579**********.4566778****************..7777....557********************9753..223443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.09E-1447140No hitNo description
SuperFamilySSF1019366.67E-1847140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.12548142IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-1748140IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.7E-1349142IPR003340B3 DNA binding domain
PfamPF023623.9E-1156139IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-20208302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-18208303IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-17212303No hitNo description
PROSITE profilePS5086311.928213305IPR003340B3 DNA binding domain
SMARTSM010198.3E-8214305IPR003340B3 DNA binding domain
PfamPF023627.3E-14217298IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-6360428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-5364427IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.402366428IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
LLYNVGAICM NSASYLLSFT SGTFYSNRVT SAMTSSCPGI DPLPSEFRFF KIIVDTTLQK  60
GKFMIPKEFT RKYGGRLLNP LFLKVPDGIE WELCWTKDGT GNVWLEKGWK EFATYYSLGY  120
GHLVTFKYQQ TCTLEVHIYN TCAVEINYPS NNTQNSSSNV LFEVAPTSPS LPGLSKKPRK  180
HPIGPGSSLP QHVQVKVDLL QENSGATRSE TPSFMVTLKD TNVNGYILVI PSIFTKKYLK  240
ETGKQDILLQ VLDGRTWHVT LKNGKFFKGW RAFVSHNYLN VGDVCIFELT ESQAPCFKVS  300
IIPISQDKCS SSQDREYVDL TKIQDFRCID TFSIKGFILN SCGFSVMSFT NGAMQEAAKF  360
TSVNPFFTLK IRANHRGDFR SRVPLDFVRE YFHKKQVTLQ FGNKSWRVKL VGAVPTKLSQ  420
GWSPFAKE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513154.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0S3SM540.0A0A0S3SM54_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-18B3 family protein